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APC is detected as a mutational cancer driver in Prostate Adenocarcinoma

APC reports in Prostate Adenocarcinoma (PRAD)

Cancer type details
Prostate Adenocarcinoma
Cohorts 13
Samples 2,819
Mutations 9,128,298
Driver genes 104
Gene details
APC
Ensembl ID ENSG00000134982
Transcript ID ENST00000257430
Protein ID ENSP00000257430
Cohorts where is driver 7
Mutated samples 84
Mutated samples (%) 2.98
Mutations 121
Mode of action Loss of function
Known driver True
Method signals per Cohort
Cohort Methods Samples Samples (%)
ClustL HotMAPS smRegions Clustered Mutations
CBaSE dNdScv Recurrent Mutations
FML Functional Mutations
MutPanning Tri-nucleotide specific bias
combination Combination
In-silico saturation mutagenesis
Alt text
In-silico saturation mutagenesis Left: In silico saturation mutagenesis of all coding variants represented in their relative position of the gene coding sequence. Relevant functional protein domains are represented within each gene body. Potential driver mutations appear in red and potential passenger mutations in gray. The concentration of driver mutations at different regions of the protein is represented as a density. The vertical bar plot shows the frequency bins of boostDM scores. Right: For each random subsample of the tumor type cohort, the number of unique mutations mapping to the gene can be counted. The bend of the best fitting curve to the subsampling data is informative of how close the current pool of mutations is from representing all the possible mutations in this gene-tumor type context..
Model Mutations Driver mutations Driver mutations (%)
PRAD (Prostate Adenocarcinoma) 25578 1097 4.29
Observed mutations in tumors
The mutations needle plot shows the distribution of the observed mutations along the protein sequence.
Mutation (GRCh38) Protein Position Samples Samples (%) Consequence Driver Driver score